intGenes {malani} | R Documentation |
Select initial gene list from original data matrix.
Description
Train G-1 SVM models in k-fold
cross validation scheme to select initial genes list.
Usage
intGenes(dat, grp, nfolds.out = 2, top.per = 0.05)
Arguments
dat |
Original gene expression data matrix with G rows (number of genes) and S column (number of samples). |
grp |
Class labels. |
nfolds.out |
Outer cross validation number (default is 2). |
top.per |
All genes are ranked based on their models performance and |
Value
Selected initial genes.
Examples
data(malanidata)
int <- intGenes(dat,grp)
print(int$top.genes)
[Package malani version 1.0 Index]