| actogram {lomb} | R Documentation |
Plot actogram
Description
plots an actogram for a time series with irregular (or regular) sampling intervals.
Usage
actogram(date, response,from ,to, scalefac, subtract, dble,
dig, border, fill, grad, lwd, photo,latitude, longitude, zone, twilight)
Arguments
date |
data datetime, format as in as.Date |
response |
which variable to plot |
from |
date for start of subsection |
to |
date for end of subsection |
scalefac |
one day is 1.0 wide. Use >1 if plots are exaggerated |
subtract |
value to subtract from response. |
dble |
logical Double plot? Ie day1 day2, day2 day3, day3 day4 ... |
dig |
logical Digitize to 0 1 based on mean? |
border |
border_colour of rectangle edges |
fill |
colour of rectangle fills, relevant only if timepoint separation is large |
grad |
logical Plot gradient? |
lwd |
line width of rectangles |
photo |
logical Plot photoperiod? Photo is true when location is entered. |
latitude |
animal location |
longitude |
animal location |
zone |
time zone of location. Default:0 = Greenwich |
twilight |
"rise/set", "civil" or "nautic" |
Details
This function plots actograms of both unevenly and evenly sampled data. It only requires data in standard R format, no special rhythms format is necessary.
Examples
## Not run:
data(caradat)
actogram(caradat$Date, caradat$Activity, dble=TRUE, photo=FALSE, dig=TRUE, fill="blue")
data(deerdat)
actogram(deerdat$Zeit, deerdat$Akt, grad=TRUE,from="2010-10-01 00:00:00",to="2011-03-31 00:00:00",
latitude=47.1415,longitude=9.5215,zone=1,twilight="nautic")
## End(Not run)