| covid19 {loadings} | R Documentation |
Proteome and metabolome data of COVID-19 serum samples.
Description
This is proteome and metabolome data of COVID-19 serum samples [B. Shen et al, Cell. 182 (2020) 59-72.e15.]. This dataset includes three groups of healthy control, mild and severe COVD-19.
Usage
data(covid19)
Format
The list object "covid19" contains the following elements:
X : List of data matrix that include samples in each rows and protein or metabolite in each columns for proteomics and metabolomics.
Y : Dummy matrix that include group information 0,1 in each columns.
D : Example of differential matrix used in PLS-ROG or multiset PLS-ROG.
tau : Example of strength parameter matrix used in mutliset PLS or multiset PLS-ROG. All weights were set as the same value of 0.1.
K : List of kernel matrix by hyperbolic tangent kernel (scale=1, offset=1).
Source
B. Shen, et al, Proteomic and Metabolomic Characterization of COVID-19 Patient Sera, Cell. 182 (2020) 59-72.e15.