| antibiotic {loadings} | R Documentation |
Metagenome and metabolome data from antibiotic-treated mouse feces.
Description
This is metagenome and metabolome data of antibiotic-treated mouse fecal samples [Y. Wakita, et al, BMC Microbiology, 18:188 (2018)]. This dataset includes six groups, comprising three types (Clea, CR, and Slc) of control mice and their antibiotic-treated counterparts.
Usage
data(antibiotic)
Format
The list object "antibiotic" contains the following elements:
data$X$microbiome$dist: Weighted UniFrac distance matrix for the metagenome.
data$X$microbiome$comp: Composition data for the metagenome.
data$X$metabolome : Metabolome data.
data$Y: A dummy matrix that includes group information with 0 or 1 in each column.
annotation$metabolome : Compound annotation for metabolome data.
Source
Y. Wakita, et al, Taxonomic classification for microbiome analysis, which correlates well with the metabolite milieu of the gut, BMC microbiology, 18:188 (2018)