fastFilter {lmQCM}

fastFilter: Subroutine for filtering expression matrix

Description

Author: Zhi Huang

Usage

fastFilter(
  RNA,
  lowest_percentile_mean = 0.2,
  lowest_percentile_variance = 0.2,
  var.func = "var"
)

Arguments

RNA

an expression matrix (rows: genes; columns: samples)

lowest_percentile_mean

a float value range 0-1

lowest_percentile_variance

a float value range 0-1

var.func

specify variance function

Value

An filtered expression matrix