gene_search {lipidmapsR} | R Documentation |
A function for Gene search
Description
A function for Gene search
Usage
gene_search(
input_item = "lmp_id",
input_value,
output_item,
output_format = ""
)
Arguments
input_item |
choose input item from the following options: "lm_id", "formula","inchi_key","pubchem_cid","hmdb_id","kegg_id","chebi_id","smiles","abbrev","abbrev_chains" |
input_value |
input the value you want to search |
output_item |
select your output from following options:"all","classification","lm_id","name","sys_name","synonyms","core","main_class","sub_class","class_level4","exactmass","formula","inchi","inchi_key","kegg_id","hmdb_id","chebi_id","lipidbank_id","pubchem_cid","smiles","molfile","structure","physchem" |
output_format |
select your output format from following options: "json (default)","text" |
Value
The search results
Author(s)
Mingzhuo Tian tianmingzhuo@outlook.com License: GPL (>= 3)
Examples
# Fetch all gene fields from gene symbol
gene_search("gene_symbol", "acaca", "all")
# Fetch gene name from Entrez gene id
gene_search("gene_id", "31", "gene_name")
[Package lipidmapsR version 1.0.4 Index]