get_best {lineup2} | R Documentation |
Get smallest distance for each individual
Description
For each individual represented in a distance matrix, find the smallest entry (with NAs for individuals present in only the rows or only the columns).
Usage
get_best(d, dimension = c("row", "column"), get_min = TRUE)
Arguments
d |
A distance matrix |
dimension |
Whether to get the minimum by row or by column |
get_min |
If TRUE, get the minimum; if FALSE, get the maximum |
Value
A vector with all distinct individuals, with the
minimum (or maximum) value by row or column. We include all
individuals so that the results are aligned with the results of
get_self()
.
See Also
get_self()
, get_2ndbest()
, which_best()
, get_nonself()
Examples
# align rows in the provided dataset, lineup2ex
aligned <- align_matrix_rows(lineup2ex$gastroc, lineup2ex$islet)
# find correlated columns
selected_genes <- (corr_betw_matrices(aligned[[1]], aligned[[2]], "paired") > 0.75)
# calculate correlation between rows
similarity <- corr_betw_matrices(t(lineup2ex$gastroc[,selected_genes]),
t(lineup2ex$islet[,selected_genes]), "all")
# maximum value by row
best_byrow <- get_best(similarity, get_min=FALSE)
# maximum value by column
best_bycol <- get_best(similarity, get_min=FALSE, dimension="column")
[Package lineup2 version 0.6 Index]