load_LANS_summary {lans2r}

Load LANS summary data

Description

Load the ROI summary information exported from LANS analyses and attach additional information to each analysis. Uses read_roi_data to read individual files.

Usage

load_LANS_summary(
  analysis,
  ...,
  base_dir = ".",
  ion_data_only = TRUE,
  load_zstacks = TRUE,
  quiet = FALSE
)

Arguments

analysis

• vector of LANS analysis folder names

...

• vectors of additional information to attach to each analysis, each argument has to have the same length as the 'analysis' parameter (or length 1)

base_dir

• the directory where all the analysis folders are located (defaults to current directory)

ion_data_only

• whether to import only ion data (TRUE by default), rather than any derived files (e.g. ratios calculated within LANS). Recommend using calculate_ratios and calculate_abundances to process the raw ion counts in easy format and good error propagation.

load_zstacks

• whether to load the planes data (ion-z.dat files need to be exported from LANS for this to be possible - they are created when the "Display depth profiles in ROI" is checked during "Display masses")

quiet

• whether to report information on the loaded data or not