DMHeatMap {kyotil}

Better Heatmap Function

Description

Makes a heatmap representation of correaltion coefficients easier.

Usage

DMHeatMap(x, Rowv = TRUE, Colv = if (symm) "Rowv" else TRUE,
 distfun = dist, hclustfun = hclust, dendrogram =
 c("both", "row", "column", "none"), symm = FALSE,
 scale = c("none", "row", "column"), na.rm = TRUE, revC
 = identical(Colv, "Rowv"), add.expr, breaks, symbreaks
 = min(x < 0, na.rm = TRUE) || scale != "none", col =
 "heat.colors", colsep, rowsep, sepcolor = "white",
 sepwidth = c(0.05, 0.05), cellnote, notecex = 1,
 notecol = "cyan", na.color = par("bg"), trace =
 c("column", "row", "both", "none"), tracecol = "cyan",
 hline = median(breaks), vline = median(breaks),
 linecol = tracecol, margins = c(5, 5), ColSideColors,
 RowSideColors, cexRow = 0.2 + 1/log10(nr), cexCol =
 0.2 + 1/log10(nc), labRow = NULL, labCol = NULL,
 labColor = NULL, axis = TRUE, heatmapOnly = FALSE, key
 = TRUE, keysize = 1.5, density.info = c("histogram",
 "density", "none"), denscol = tracecol, symkey = min(x
 < 0, na.rm = TRUE) || symbreaks, densadj = 0.25, main
 = NULL, xlab = NULL, ylab = NULL, lmat = NULL, lhei =
 NULL, lwid = NULL, lower.left.only = TRUE, legend =
 TRUE, legend.x = "topright", verbose = FALSE, ...)

Arguments

x

tbd

axis

tbd

heatmapOnly

tbd

verbose

tbd

legend.x

tbd

legend

tbd

Rowv

tbdRowv

Colv

tbdColv

distfun

tbddistfun

hclustfun

tbdhclustfun

dendrogram

tbddendrogram

symm

tbdsymm

scale

tbdscale

na.rm

tbdna.rm

revC

tbdrevC

add.expr

tbdadd.expr

breaks

tbdbreaks

symbreaks

tbdsymbreaks

col

tbdcol

colsep

tbdcolsep

rowsep

tbdrowsep

sepcolor

tbdsepcolor

sepwidth

tbdsepwidth

cellnote

tbdcellnote

notecex

tbdnotecex

notecol

tbdnotecol

na.color

tbdna.color

trace

tbdtrace

tracecol

tbdtracecol

hline

tbdhline

vline

tbdvline

linecol

tbdlinecol

margins

tbdmargins

ColSideColors

tbdColSideColors

RowSideColors

tbdRowSideColors

cexRow

tbdcexRow

cexCol

tbdcexCol

labRow

tbdlabRow

labCol

tbdlabCol

labColor

tbdlabColor

key

tbdkey

keysize

tbdkeysize

density.info

tbddensity.info

denscol

tbddenscol

symkey

tbdsymkey

densadj

tbddensadj

main

tbdmain

xlab

tbdxlab

ylab

tbdylab

lmat

tbdlmat

lhei

tbdlhei

lwid

tbdlwid

lower.left.only

tbdlower.left.only

...

tbd...

Examples

cor=matrix(runif(15),5,3)
breaks=c(-1,-.7,-.5,-.3,-.1,.1,.3,.5,.7,1)
hU=DMHeatMap(cor, trace="none", symm=FALSE,dendrogram="none", col=RColorBrewer::brewer.pal(
    length(breaks)-1,"RdYlGn"), distfun = function(c) as.dist(1 - c), cexRow =1.5, cexCol =1.5, 
    lmat=rbind( c(2, 1), c(4,3) ), lhei=c(4, 1 ), breaks=breaks, margins=c(2,2), key = FALSE, 
    Rowv=NA, lower.left.only=FALSE)