| phosphonetwork_df {ksrlive} | R Documentation |
site specific kinase substrate relationship dataset
Description
This dataset contains all site specific kinase relationships from PhosphoSitePlus, PhosphoElm, HPRD and PhosphoPoint.
Usage
phosphonetwork_df
Format
'data.frame': 13505 obs. of 34 variables: $ SUB_ACC_ID : chr "A1KXE4" "A1X283" "A2A9C3" "A2APB8" ... $ MODSITE_SEQ : chr "QTGYTPGTPYKVSCS" "DMSASAGYEEISDPD" "TPGSLVGSPREASGM" "KIARDPQTPILQTKY" ... $ KIN_ACC_ID : chr "P24941" "P12931" "Q9JLN9" "P63085" ... $ ORG : Factor w/ 17 levels "chicken","cow",..: 8 8 10 10 10 8 8 10 8 8 ... $ KINASE : chr "CDK2" "SRC" "MTOR" "ERK2" ... $ KIN_GENE_SYMB : chr "CDK2" "SRC" "MTOR" "MAPK1" ... $ HU_CHR_LOC : Factor w/ 274 levels "","10p11.1","10p11.23",..: 27 132 1 1 1 7 215 1 173 13 ... $ SUBSTRATE : chr "FAM168B" "SH3PXD2B" "SZT2" "TPX2" ... $ SUB_GENE_ID : chr "130074" "285590" "230676" "72119" ... $ SUB_GENE_SYMB : chr "FAM168B" "SH3PXD2B" "Szt2" "Tpx2" ... $ SUB_MOD_RSD : chr "T57" "Y508" "S3230" "T369" ... $ SITE_GRP_ID : int 9831677 17303901 14575118 455432 3202029 3963101 975498 468668 451197 454238 ... $ IN_VIVO_RXN : Factor w/ 2 levels " ","X": 1 2 2 1 1 1 2 1 2 2 ... $ IN_VITRO_RXN : Factor w/ 2 levels " ","X": 2 1 1 2 2 2 1 2 2 2 ... $ CST_CAT. : Factor w/ 563 levels "","11817","11834",..: 1 1 1 1 1 1 1 1 1 1 ... $ PhosphositePLUS : num 1 1 1 1 1 1 1 1 1 1 ... $ SEQ : chr "MNPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYKVSCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGM"| __truncated__ "MPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSGSTEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLIPIDEYCKALIQLPPYISQCDEVLQFFETRPE"| __truncated__ "MASERPEPEVEEAGQVFLLMKKDYRISRNVRLAWFLNHLHQTVQATPQELLLQSEQELEVLSVLPPGWQPDEPVVPRPFLLVPSTRVTFLAWQYRFVIELDLSPSTGIVDDSTGEILFDEVFHALSR"| __truncated__ "MSQVPTTYSFDAPTDFINFSSLDAEEDTENIDSWFDEKANLENKFLRQRGIGEPFQGKNSLRKAKLQQGFVTPLKAVDNTYHKETEKENLQKQSIPSNDCSSLDAKRAVSGNTPVQPQRRSIRLSAQ"| __truncated__ ... $ PhosphoELM : num NA NA NA NA NA NA NA NA NA NA ... $ SwissProt : chr NA NA NA NA ... $ PubMed : Factor w/ 2842 levels "",";","10023679;",..: NA NA NA NA NA NA NA NA NA NA ... $ KIN_GENE_ID : chr NA NA NA NA ... $ HPRD : num NA NA NA NA NA NA NA NA NA NA ... $ PhosphoPoint : num NA NA NA NA NA NA NA NA NA NA ... $ SUB_HPRD_ID : int NA NA NA NA NA NA NA NA NA NA ... $ SUB_HPRDISO_ID : Factor w/ 13183 levels "00001_1","00002_1",..: NA NA NA NA NA NA NA NA NA NA ... $ KIN_HPRD_ID : Factor w/ 517 levels "-","00021","00084",..: NA NA NA NA NA NA NA NA NA NA ... $ SUB_ACC_ID.human : chr "A1KXE4" "A1X283" "Q5T011" "Q9ULW0" ... $ Position : chr "57" "508" "3230" "369" ... $ MODSITE_SEQ.human : chr "QTGYTPGTPYKVSCS" "DMSASAGYEEISDPD" "APGSSAGSPGEASGL" "KICRDPQTPVLQTKH" ... $ MODSITE_SEQ.mouse : chr "QTGYTPGTPYKVSCS" "DLSASTGYEEISDPT" "TPGSLVGSPREASGM" "KIARDPQTPILQTKY" ... $ SUB_ACC_ID.mouse : chr "Q80XQ8" "A2AAY5" "A2A9C3" "A2APB8" ... $ KIN_ACC_ID.human : chr "P24941" "P12931" "P42345" "P28482" ... $ KIN_GENE_SYMB.human: chr "CDK2" "SRC" "MTOR" "MAPK1" ... $ SUB_IDENT : chr "A1KXE4_QTGYTPGTPYKVSCS" "A1X283_DMSASAGYEEISDPD" "Q5T011_APGSSAGSPGEASGL" "Q9ULW0_KICRDPQTPVLQTKH" ...
[Package ksrlive version 1.0 Index]