| mentari {kindisperse} | R Documentation |
Position & kinship information of Aedes aegypti from Mentari Court, Malaysia
Description
A data file containing the positions & kinship values of 98 Ae. aegypti larval kin pairs collected between September 19 & October 10, 2017 in Mentari Court (Petaling Jaya), Malaysia.
Usage
mentari
Format
A data frame with 98 rows and 10 variables
- id1
id of first individual of kinpair
- id2
id of second individual of kinpair
- kinship
kinship category of the pairing
- distance
geographical distance between kinpair
- x1
relative x coordinate of first individual in metres
- y1
relative y coordinate of first individual in metres
- x2
relative x coordinate of second individual in metres
- y2
relative y coordinate of second individual in metres
- lifestage
lifestage at time of sampling of kinpair
- k_loiselle
calculated Loiselle's k value for kinpair
Details
162 individuals were sourced as larvae from ovitraps placed in eight apartment buildings (in floors three or four for each), collected over three weeks. Entire larval bodies were extracted and sequenced using the double-digest restriction-site- associated DNA sequencing protocol for Ae. aegypti (doi: 10.1186/1471-2164-15-275. After sequencing & genotyping, Loiselle's k was used as an initial estimate of genetic kinship. The program ML-Relate (doi: 10.1111/j.1471-8286.2006.01256.x) was then used to estimate the pedigree kinships for the FS and HS categories. Following simulation work described in doi: 10.1111/1755-0998.13043 the 1C category was assigned to all remaining unassigned individuals with a Loiselle's k of less than 0.06.
Value
returns an object of class tbl_df