| allmeta {kgp} | R Documentation |
1000 Genomes, SGDP, HGDP, and GGVP metadata
Description
Population metadata from 212 populations from the 1000 Genomes Project (kgp), Simons Genome Diversity Project (sgdp), Human Genome Diversity Project (hgdp), and Gambian Genome Variation Project (ggvp).
Usage
allmeta
Format
A tibble with 212 rows and 8 columns:
- pop
Short population code
- reg
Short region code
- population
Long population description
- region
Long region description
- regcolor
Color for plotting this region on a map
- lat
Population latitude
- lng
Population longitude
- dataset
Which dataset (kgp = 1000 Genomes Project; ggvp = Gambian Genome Variation Project; hgdp = Human Genome Diversity Project; Simons Genome Diversity Project).
References
Byrska-Bishop, Marta, et al. "High-coverage whole-genome sequencing of the expanded 1000 Genomes Project cohort including 602 trios." Cell 185.18 (2022): 3426-3440.
1000 Genomes Project Consortium. "A global reference for human genetic variation." Nature 526.7571 (2015): 68.
Clarke, Laura, et al. "The international Genome sample resource (IGSR): A worldwide collection of genome variation incorporating the 1000 Genomes Project data." Nucleic acids research 45.D1 (2017): D854-D859.
License information is available at https://github.com/igsr/1000Genomes_data_indexes/blob/master/LICENSE. The 1000 Genomes data is made publicly available according to the Fort Lauderdale Agreement (https://www.genome.gov/Pages/Research/WellcomeReport0303.pdf).