log_likelihood_haploid {junctions}

log likelihood of the time since admixture for a haploid genome

Description

log likelihood of the time since admixture for a set of single chromosomes (for ex. in Yeast).

Usage

log_likelihood_haploid(ancestry_matrix, N = 1000, freq_ancestor_1 = 0.5, t = 2)

Arguments

ancestry_matrix

matrix with 3 columns, column 1 = chromosome, column 2 = location in Morgan, column 3 = ancestry.

N

Population Size

freq_ancestor_1

Frequency of ancestor 1 at t = 0

t

time since admixture

Value

loglikelihood