jaccard.test.pairwise {jaccard}

Pair-wise tests for Jaccard/Tanimoto similarity coefficients

Description

Given a data matrix, it computes pair-wise Jaccard/Tanimoto similarity coefficients and p-values among rows (variables). For fine controls, use "jaccard.test".

Usage

jaccard.test.pairwise(dat, method = "mca", verbose = TRUE,
  compute.qvalue = TRUE, ...)

Arguments

dat

a data matrix

method

a method to compute a p-value ("mca", "bootstrap", "asymptotic", or "exact")

verbose

whether to print progress messages

compute.qvalue

whether to compute q-values

...

optional arguments for specific computational methods

Value

jaccard.test.pairwise returns a list of matrices

statistics

Jaccard/Tanimoto similarity coefficients

pvalues

p-values

qvalues

q-values

See Also

jaccard.test