validISAObject {isatabr} | R Documentation |
Check the validity of an object of class ISA.
Description
The validISAObject
function checks whether an object of class
ISA is a valid object. An object of the ISA is
considered valid when:
There is only one investigation file, which name starts with i_ and ends with .txt, present in the folder containing the ISA-Tab files.
All sections in the investigation file contain at least the columns specified for that specific section at https://isa-specs.readthedocs.io/en/latest/isatab.html
The study and assay files contain at least the columns specified at https://isa-specs.readthedocs.io/en/latest/isatab.html
Usage
validISAObject(object)
Arguments
object |
An object of class ISA. |
Value
TRUE or an error message.
See Also
Examples
## Read example Atwell data set.
isaObject1 <- readISATab(path = file.path(system.file("extdata/Atwell",
package = "isatabr")))
## Check validity of the object.
validISAObject(isaObject1)
[Package isatabr version 1.0.1 Index]