mrbayes.prset {ips}R Documentation

Set Priors for MrBayes

Description

Set prior distributions for mrbayes.

Usage

mrbayes.prset(...)

Arguments

...

arguments in tag = value form, or a list of tagged values. The tags must come from the names of prior distribution parameters described in the ‘Prior Distribution Parameters’ section.

Value

a list of length zero (see 'Note')

Prior Distribution Parameters

traitiopr
revmatpr
aamodelpr
aarevmatpr
omegapr
ny98omega1pr
ny98omega3pr
m3omegapr
codoncatfreqs
statefreqpr
shapepr
ratecorrpr
pinvarpr
covswitchpr
symdirihyperpr
topologypr
brlenspr
clockvarpr
igrvarpr

Note

This function currently returns an empty set of prior distribution parameters, i.e., you cannot change the MrBayes default parameters.

Author(s)

Christoph Heibl

References

J.P. Huelsenbeck & Ronquist F. 2001. MrBayes: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.

Ronquist F. & J.P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Biometrics 19: 1572-1574.

MrBayes website: https://mrbayes.sourceforge.net/.

See Also

mrbayes.lset to set model parameters, mrbayes.mcmc to set parameters of the Markov chain Monte Carlo (MCMC), and mrbayes to run MrBayes locally or prepare input files for a computer cluster.

Examples

mrbayes.prset()

[Package ips version 0.0.12 Index]