calculate.orbit.counts {incgraph}

Calculate orbit counts from scratch

Description

calculate.orbit.counts calculates the orbit counts of the current network.

Usage

calculate.orbit.counts(network)

Arguments

network

An instance of the incgraph.network class

Details

The complete orbit counts is calcucated using the count5 from the orca package.

Calling this method repeatedly becomes very inefficient for evolving networks. For evolving networks, the usage of calculate.delta is recommended.

For more details on this method, see Hočevar and Demšar (2014).

Value

An N-by-73 matrix, with N the number of nodes in the network and 1 column for each possible orbit. The value of mat[i,j] is the number of times node i has orbit j in a subgraph in the network.

References

Hočevar, T. and Demšar J. (2014) A combinatorial approach to graphlet counting. Bioinformatics.

See Also

See new.incgraph.network for examples and usage.