MLH {inbreedR} | R Documentation |
Calculate multilocus heterozygosity (MLH)
Description
MLH is defined as the total number of heterozygous loci in an individual divided by the number of loci typed in the focal individual. An MLH of 0.5 thus means that 50 percent of an indiviudals loci are heterozygous.
Usage
MLH(genotypes)
Arguments
genotypes |
data.frame with individuals in rows and loci in columns, containing genotypes coded as 0 (homozygote), 1 (heterozygote) and NA (missing) |
Value
Vector of individual multilocus heterozygosities
Author(s)
Martin A. Stoffel (martin.adam.stoffel@gmail.com)
References
Coltman, D. W., Pilkington, J. G., Smith, J. A., & Pemberton, J. M. (1999). Parasite-mediated selection against inbred Soay sheep in a free-living, island population. Evolution, 1259-1267.
Examples
data(mouse_msats)
genotypes <- convert_raw(mouse_msats)
het <- MLH(genotypes)
[Package inbreedR version 0.3.3 Index]