intensity_PXD000501 {imputeLCMD}

Dataset PXD000501 from ProteomeXchange.

Description

This dataset contains three biological replicates with three technical replicates each for the conditiones media (CM) and the whole cell lysates (WCL) of C8-D1A cell lines. The dataset within this package contains proteins iBAQ intensity processed using MaxQuant. More information can be found on ProteomeExchange public repository (http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000501) or in the original paper (see reference).

Usage

data(intensity_PXD000501)

Format

A data frame with 7363 observations on the following 19 variables.

Protein.IDs

Peptides/Proteins names

iBAQ.secretome_set1_tech1

a numeric vector

iBAQ.secretome_set1_tech2

a numeric vector

iBAQ.secretome_set1_tech3

a numeric vector

iBAQ.secretome_set2_tech1

a numeric vector

iBAQ.secretome_set2_tech2

a numeric vector

iBAQ.secretome_set2_tech3

a numeric vector

iBAQ.secretome_set3_tech1

a numeric vector

iBAQ.secretome_set3_tech2

a numeric vector

iBAQ.secretome_set3_tech3

a numeric vector

iBAQ.whole_set1_tech1

a numeric vector

iBAQ.whole_set1_tech2

a numeric vector

iBAQ.whole_set1_tech3

a numeric vector

iBAQ.whole_set2_tech1

a numeric vector

iBAQ.whole_set2_tech2

a numeric vector

iBAQ.whole_set2_tech3

a numeric vector

iBAQ.whole_set3_tech1

a numeric vector

iBAQ.whole_set3_tech2

a numeric vector

iBAQ.whole_set3_tech3

a numeric vector

Source

Original MaxQuant data: http://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000501

References

Han D, Jin J, Woo J, Min H, Kim Y, Proteomic analysis of mouse astrocytes and their secretome by a combination of FASP and StageTip-based, high pH, reversed-phase fractionation. Proteomics, ():(2014).

Examples

  data(intensity_PXD000501)