impute.MAR.MNAR {imputeLCMD}

Imputation under MCAR and MNAR hypothesis

Description

this function performs missing values imputation under MCAR and MNAR hypothesis

Usage

impute.MAR.MNAR(
  dataSet.mvs,
  model.selector,
  method.MAR = "KNN",
  method.MNAR = "QRILC"
)

Arguments

dataSet.mvs

expression matrix containing abundances with MVs (either peptides or proteins)

model.selector

- binary vector; "1" indicates MCAR proteins

method.MAR

- the method to be used for MAR missing values - possible values: MLE (default), SVD, KNN

method.MNAR

- the method to be used for MAR missing values

Value

dataset containing complete abundances