vis.clonal_family {immunarch} | R Documentation |
Visualise clonal family tree: wrapper for calling on the entire repClonalFamily output
Description
Visualise clonal family tree: wrapper for calling on the entire repClonalFamily output
Usage
## S3 method for class 'clonal_family'
vis(.data, ...)
Arguments
.data |
Clonal families from 1 or multiple samples: |
... |
Not used here. |
Value
A ggraph object.
Examples
data(bcrdata)
bcr_data <- bcrdata$data
clonal_family <- bcr_data %>%
seqCluster(seqDist(bcr_data), .fixed_threshold = 3) %>%
repGermline(.threads = 1) %>%
repAlignLineage(.min_lineage_sequences = 2, .align_threads = 2, .nofail = TRUE) %>%
repClonalFamily(.threads = 1, .nofail = TRUE) %>%
vis()
[Package immunarch version 0.9.1 Index]