enrich_f {immcp}

enrich_f

Description

Enrich Analysis

Usage

enrich_f(
  target_character,
  geneset = c("kegg", "mkegg", "go", "wp"),
  arguments = list(minGSSize = 5, maxGSSize = 500, pvalue = 0.05, qvalue = 0.1),
  out_dataframe = TRUE,
  to_ENTREZID = TRUE
)

Arguments

target_character

Charactor vector of gene.

geneset

Charactor vector, one of "kegg"(KEGG), "mkegg"(KEGG Module), "go"(GO-BP), and "wp"(WikiPathways); a data frame and list.

arguments

A list of the arguments of clusterProfiler, including minGSSize, maxGSSize, pvalue, and qvalue.

out_dataframe

Logical, whether to output data frame,defaults to FALSE.

to_ENTREZID

Logical, whether to translate to ENTREZID from SYMBOL, defaults to TRUE.

Value

data frame

Author(s)

Yuanlong Hu