selectCases {imcExperiment}

subsets the imcExperiment to a case along with all slots for a selected multiple ROIs.

Description

subsets the imcExperiment to a case along with all slots for a selected multiple ROIs.

method to subset the slots, requires colData with column "ROIID"

Usage

selectCases(object, value, ...)

## S4 method for signature 'imcExperiment'
selectCases(object, value)

Arguments

object

IMC container

value

this is ROIID vector

...

additional parameters

Value

imcExperiment container of selected cases

imcExperiment container of selected cases

Examples

data(imcdata)
myCases<-selectCases(imcdata,c("30-BM16-202_7Pre_s1_p1_r4_a4_ac","B17_350_14post_s1_p1_r5_a5_ac"))
myCases
table(colData(myCases)$ROIID)
data(imcdata)
myCases<-selectCases(imcdata,c("30-BM16-202_7Pre_s1_p1_r4_a4_ac","B17_350_14post_s1_p1_r5_a5_ac"))
myCases
table(colData(myCases)$ROIID)