variants_chrpos {ieugwasr}

Obtain information about chr pos and surrounding region

Description

For a list of chromosome and positions, finds all variants within a given radius

Usage

variants_chrpos(chrpos, radius = 0, opengwas_jwt = get_opengwas_jwt())

Arguments

chrpos

list of ⁠<chr>:<pos>⁠ in build 37, e.g. c("3:46414943", "3:122991235"). Also allows ranges e.g. "7:105561135-105563135"

radius

Radius around each chrpos, default = 0

opengwas_jwt

Used to authenticate protected endpoints. Login to https://api.opengwas.io to obtain a jwt. Provide the jwt string here, or store in .Renviron under the keyname OPENGWAS_JWT.

Value

Data frame