ld_matrix_local {ieugwasr} | R Documentation |
Get LD matrix using local plink binary and reference dataset
Description
Get LD matrix using local plink binary and reference dataset
Usage
ld_matrix_local(variants, bfile, plink_bin, with_alleles = TRUE)
Arguments
variants |
List of variants (rsids) |
bfile |
Path to bed/bim/fam ld reference panel |
plink_bin |
Specify path to plink binary. Default = |
with_alleles |
Whether to append the allele names to the SNP names.
Default: |
Value
data frame
[Package ieugwasr version 1.0.1 Index]