Map.All {iC10TrainingData}

Probe mapping of the complete set of features of the training set

Description

Probe mapping of the complete set of features of the training set

Usage

data(Map.All)

Format

A data frame with 714 observations on the following 10 variables:

Probe_ID

a character vector with the Illumina probe ids that flank the features

Gene_symbol

a factor with the hugo gene names

Ensembl_ID

a factor with the ensemble ids

Cytoband

a factor with the cytobands (on hg18)

Genomic_location_hg18

a factor with the genomic locations on hg18

chromosome_name_hg18

a numeric vector with the chromosome on hg18

start_position_hg18

a numeric vector with the start position on hg18

end_position_hg18

a numeric vector with the end position on hg18

Synonyms_0

a character vector with the gene name synonyms of the feature

Gene.Chosen

a character vector (YES or NO) specifiying the probe chosen for gene-based selection

Genomic_location_hg19

a factor with the genomic locations on hg19

chromosome_name_hg19

a numeric vector with the chromosome on hg19

start_position_hg19

a numeric vector with the start position on hg19

end_position_hg19

a numeric vector with the end position on hg19

chromosome_name_hg38

a numeric vector with the chromosome on hg38

start_position_hg38

a numeric vector with the start position on hg38

end_position_hg38

a numeric vector with the end position on hg38

Source

Curtis et al. The genomic and transcriptomic architecture of 2,000 breast tumours reveals novel subgroups. Nature 2012; 486:346-352.

Examples

data(Map.All)
head(Map.All)