getCNfeatures {iC10}

Internal function for matching copy number features.

Description

This function should not be called directly

Usage

getCNfeatures(CN, Probes, Map, by.feat, ref, Synonyms)

Arguments

CN

CN features matrix

Probes

Vector with the probes to match

Map

data.frame with the genomic description of the features to match

by.feat

"probe" or "gene", indicating if match should be done by probe position or gene name.

ref

hg18 or hg19 (only relevant if matching is done by probe position).

Synonyms

data.frame with available synonym gene names to match (only relevant if matching is done by gene name).

Value

A matrix with the copy number features

Author(s)

Oscar M Rueda