utils {hlaR}

Basic functions

Description

GenerateLookup() called in CalEpletMHCII()

Usage

GenerateLookup(lkup_in, locus_in)

CalRiskScore(dat_in)

FuncForCompHaplo(tbl_raw, tbl_in)

na_to_empty_string(df)

Arguments

lkup_in

data table

locus_in

string CalRiskScore() calculate DR DQ risk score, it's called in CalEpletMHCII()

dat_in

dataframe FuncForCompHaplo() called in ImputeHaplo()

tbl_raw

data frame

tbl_in

data frame na_to_empty_string()

df

dataframe