genotypes {hiphop}

Genotypes of individuals scored at different loci

Description

A dataset containing genotypes of 1407 superb fairy wrens (Malurus cyaneus) from five cohorts (breeding seasons 2014-2018) from the Australian National Botanic Garden. Each individual (rows) is scored at 1376 loci (columns) with the scores meaning: 0: homozygotes at common allele; 1: homozygote at rare allele and 2: heterozygotes; NA: locus could not be scored.

Usage

genotypes

Format

A data frame with 1407 rows (individuals) and 1376 variables (loci)

Author(s)

Andrew Cockburn, [e-mail]

Source

Cockburn et al. (2020) HIPHOP: improved paternity assignment among close relatives using a simple exclusion method for biallelic markers. Molecular Ecology Resources, in revision.