pcoa {hierfstat} | R Documentation |
Principal coordinate analysis
Description
principal coordinates analysis as described in Legendre & Legendre Numerical Ecology
Usage
pcoa(mat,plotit=TRUE,...)
Arguments
mat |
a distance matrix |
plotit |
Whether to produce a plot of the pcoa |
... |
further arguments (graphical for instance) to pass to the function |
Value
valp |
the eigen values of the pcoa |
vecp |
the eigen vectors of the pcoa (the coordinates of observations) |
eucl |
The cumulative euclidian distances among observations, |
Author(s)
Jerome Goudet jerome.goudet@unil.ch
Examples
data(gtrunchier)
colo<-c("black","red","blue","yellow","orange","green")
pcoa(as.matrix(genet.dist(gtrunchier[,-1])),col=rep(colo,c(5,5,4,5,5,5)))
[Package hierfstat version 0.5-11 Index]