biall2dos {hierfstat} | R Documentation |
Converts bi-allelic SNPs from hierfstat format to dosage format
Description
Converts bi-allelic SNPs hierfstat format to dosage format, the number of alternate allele copies at a locus for an individual, i.e. 11 -> 0; 12 or 21 >1 and 22 ->2
Usage
biall2dos(dat,diploid=TRUE)
Arguments
dat |
a hierfstat data frame without the first column (the population identifier), individuals in rows, columns with individual genotypes encoded as 11, 12, 21 and 22 |
diploid |
whether the data set is from a diploid organism |
Value
a matrix containing allelic dosages
Examples
## Not run:
biall2dos(sim.genot(nbal=2,nbloc=10)[,-1]) # a 10 column matrix
## End(Not run)
[Package hierfstat version 0.5-11 Index]