prepare_heatmap_data2 {heatmapFlex} | R Documentation |
Function to prepare data for a heatmap: scaling, dendrograms, ...
Description
Function to prepare data for a heatmap: scaling, dendrograms, ...
Usage
prepare_heatmap_data2(
x,
labRow = NA,
labCol = NA,
Rowv = NULL,
Colv = NULL,
reorder = c(TRUE, TRUE),
distfun = dist,
hclustfun = hclust,
rowMembers = NULL,
colMembers = NULL,
spacer = 1,
scale = "none",
trim = NULL,
zlim = NULL,
col = NULL,
filter = c(TRUE, TRUE),
add.sig = FALSE,
pv = NULL
)
Arguments
x |
( |
labRow |
( |
labCol |
( |
Rowv |
( |
Colv |
( |
reorder |
( |
distfun |
( |
hclustfun |
( |
rowMembers |
( |
colMembers |
( |
spacer |
( |
scale |
( |
trim |
( |
zlim |
( |
col |
( |
filter |
( |
add.sig |
( |
pv |
( |
Details
This function is used by heatmap.n2
and should not be called bu the user directly. It is only documented because its arguments are passed by the main function when given there.