gsalib-package {gsalib} | R Documentation |
Utility functions for GATK
Description
Utility functions for analysis of genome sequence data with the GATK
Details
Package: | gsalib |
Type: | Package |
Version: | 2.2 |
Date: | 2015-03-17 |
License: | MIT |
LazyLoad: | yes |
This package is primarily meant to be used programmatically by GATK tools. However the gsa.read.gatkreport() function can be used to easily read in data from a GATKReport. A GATKReport is a multi-table document generated by GATK tools.
Author(s)
Kiran Garimella
Maintainer: Louis Bergelson <louisb@broadinstitute.org>
References
https://gatk.broadinstitute.org/hc/en-us/articles/360035532172-GATKReport-and-gsalib
Examples
test_file = system.file("inst", "extdata", "test_gatkreport.table", package = "gsalib");
report = gsa.read.gatkreport(test_file);
[Package gsalib version 2.2.1 Index]