plots.by |
A character that gives the names of the set of
factor s by which the data is to be grouped and a separate
plot produced for each group. If NULL , no groups are formed. If a
set of factor s, such as Type , Tuning and
Method , that uniquely index the combinations of the
smoothing-parameter values is specified, then groups are formed for each
combination of the levels of the these factor s, and a separate plot is
produced for each combination.
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facet.x |
A character giving the names of the factor s
to be used to form subsets to be plotted in separate columns of the
profiles plots. The default of "." results
in no split into columns.
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facet.y |
A character giving the factor s
to be used to form subsets to be plotted in separate rows of the
profiles plots. The default of "." results
in no split into rows.
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include.raw |
A character indicating whether plots of the
raw (unsmoothed) trait, corresponding to the plots of the smoothed traits,
are to be included in profile plots. The options are no , alone ,
facet.x , or facet.y . That is, the plots of the raw traits are
plotted separately or as part of either facet.x or
facet.y .
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collapse.facets.x |
A logical to indicate whether all variables
specified by facets.x are to be collapsed to a single variable.
Note that the smoothing-parameters factors, if present, are always collapsed.
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collapse.facets.y |
A logical to indicate whether all variables
specified by facets.y are to be collapsed to a single variable.
Note that the smoothing-parameters factors, if present, are always collapsed.
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facet.labeller |
A ggplot function for labelling the
facets of a plot produced using the ggplot function.
For more information see ggplot .
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facet.scales |
A character specifying whether the scales are shared
across all facets of a plot ("fixed"), or do they vary across rows (the
default, "free_x"), columns ("free_y"), or both rows and columns ("free")?
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breaks.spacing.x |
A numeric whose absolute values specifies the
distance between major breaks for the x-axis in a sequence beginning with the
minimum x value and continuing up to the maximum x value. If it is negative,
the breaks that do not have x values in data will be omitted.
Minor breaks will be at half major break value or, if these do not correspond to
x-values in data when breaks.spacing.x is negative, have
a spacing of one. Thus, when breaks.spacing.x is negative,
grid lines will only be included for x-values that occur in data .
These settings can be overwritten by supplying, in ggplotFuncs ,
a scale_x_continuous function from ggplot2 .
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angle.x |
A numeric between 0 and 360 that gives the angle of the
x-axis text to the x-axis. It can also be set by supplying, in
ggplotFuncs , a theme function from ggplot2 .
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colour |
A character specifying a single colour to use in
drawing the lines for the profiles. If colouring according to the
values of a variable is required then use colour.column .
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colour.column |
A character giving the name of a column
in data over whose values the colours of the lines are to be
varied. The colours can be specified using colour.values .
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colour.values |
A character vector specifying the values of
the colours to use in drawing the lines for the profiles.
If this is a named vector, then the values will be matched based
on the names. If unnamed, values will be matched in order
(usually alphabetical) within the limits of the scale.
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alpha |
A numeric specifying the degrees of
transparency to be used in plotting the responses.
It is a ratio in which the denominator specifies the number of
points (or lines) that must be overplotted to give a solid cover.
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addMediansWhiskers |
A logical indicating whether plots over
time of the medians and outer whiskers are to be added to the plot.
The outer whiskers are related to the whiskers on a box-and-whisker
and are defined as the median plus (and minus) 1.5 times the
interquartile range (IQR). Points lying outside the whiskers are
considered to be potential outliers.
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ggplotFuncs |
A list , each element of which contains the
results of evaluating a ggplot function.
It is created by calling the list function with
a ggplot function call for each element.
These functions are applied in creating the ggplot
object for a profiles plot.
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... |
allows arguments to be passed to other functions; not used at present.
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