| gomms {gomms} | R Documentation |
GLM-Based Ordination Method for Microbiome Samples
Description
estimate factor loadings and scores.
Usage
gomms(X, n.factors = 2, min.prop.nonzeros = 0.05, show.max.delta = FALSE)
Arguments
X |
raw count data. |
n.factors |
number of factors. Default value is 2. |
min.prop.nonzeros |
minimum proportion of nonzeros allowed in analysis. |
show.max.delta |
display the maximum different between jth and (j+1)th iterations. |
Value
estimated factor scores.
Author(s)
Michael B. Sohn
Maintainer: Michael B. Sohn <msohn@mail.med.upenn.edu>
References
Sohn, M.B. and Li, H. (2017). A GLM-Based Latent Variable Ordination Method for Microbiome Samples (Submitted).
[Package gomms version 1.0 Index]