| radish2 {glmm} | R Documentation |
Radish count data set
Description
Data on life history traits for the invasive California wild radish Raphanus sativus.
Usage
data(radish2)Format
A data frame with the following columns:
- Site
Categorical. Experimental site where plant was grown. Two sites in this dataset.
- Block
Categorical. Blocked nested within site.
- Region
Categorical. Region from which individuals were obtained: northern, coastal California (N) or southern, inland California (S).
- Pop
Categorical. Wild population nested within region.
- varb
Categorical. Gives node of graphical model corresponding to each component of resp. This is useful for life history analysis (see aster package).
- resp
Response vector.
- id
Categorical. Indicates individual plants.
References
These data are a subset of data previously analyzed using fixed effect
aster methods (R function aster) in the following.
Ridley, C. E. and Ellstrand, N. C. (2010). Rapid evolution of morphology and adaptive life history in the invasive California wild radish (Raphanus sativus) and the implications for management. Evolutionary Applications, 3, 64–76.
These data are a subset of data previously analyzed using random effect
aster methods (R function reaster) in the following.
Geyer, C. J., Ridley, C. E., Latta, R. G., Etterson, J. R., and Shaw, R. G. (2013) Local Adaptation and Genetic Effects on Fitness: Calculations for Exponential Family Models with Random Effects. Annals of Applied Statistics, 7, 1778–1795. doi:10.1214/13-AOAS653.
Examples
data(radish2)