plot_time_series {ggsmc}

Plot line graph showing parameter value vs dimension from algorithm output.

Description

Plot line graph showing parameter value vs dimension from algorithm output.

Usage

plot_time_series(
  output,
  parameters,
  target = NULL,
  external_target = NULL,
  use_initial_points = TRUE,
  use_weights = TRUE,
  max_line_width = 1,
  alpha = 0.1,
  xlimits = NULL,
  ylimits = NULL
)

Arguments

output

Output from the SMC or EnK algorithm.

parameters

The parameters we wish to be on the y-axis of the line graph.

target

(optional) The target to plot. (default is to use all targets)

external_target

(optional) The external target to plot. (default is to use all external targets, or to ignore if the column is not present)

use_initial_points

(optional) If target is not specified and this argument is TRUE, will add the initial unweighted proposed points to the output to be plotted. (default is TRUE)

use_weights

(optional) If FALSE, will ignore particle weights in the line graph. If TRUE, will use the particle weights. (defaults to TRUE)

max_line_width

(optional) The maximum size of the points in the plot. (default=1)

alpha

(optional) The transparency of the lines in the plot. (default=0.1)

xlimits

(optional) Input of the form c(start,end), which specifies the ends of the x-axis.

ylimits

(optional) Input of the form c(start,end), which specifies the ends of the y-axis.

Value

A line graph in a ggplot figure.