scidca.glm {ggscidca} | R Documentation |
scidca.glm
Description
scidca.glm
Usage
## S3 method for class 'glm'
scidca(
fit,
newdata = NULL,
timepoint = "median",
cmprsk = FALSE,
modelnames = NULL,
merge = FALSE,
y.min = NULL,
xstop = NULL,
y.max = NULL,
pyh = NULL,
relcol = "#c01e35",
irrelcol = "#0151a2",
relabel = "Nomogram relevant",
irrellabel = "Nomogram irrelevant",
text.size = 4.5,
text.col = "green",
colbar = TRUE,
threshold.text = FALSE,
threshold.line = FALSE,
nudge_x = 0,
nudge_y = 0,
threshold.linetype = 2,
threshold.linewidth = 1.2,
threshold.linecol = "black",
po.text.size = 4,
po.text.col = "black",
po.text.fill = "white",
liftpec = NULL,
rightpec = NULL,
legend.position = c(0.85, 0.75)
)
Arguments
fit |
Fill in the model you want to analyze. Support survival analysis and logistic regression. |
newdata |
If the decision curve of the validation set is to be analysed. Fill in the validation set data here. |
timepoint |
If it is a survival analysis, fill in the point in time you need to study. The default is the median time. |
cmprsk |
If it is a competitive risk model, select TRUE here. |
modelnames |
Defines the name of the generated image model. |
merge |
If true is selected it will merge the two long zones. |
y.min |
The maximum value of the negative part of the picture. Generally defaults to positive values multiplied by 0.4. |
xstop |
The maximum value of the X-axis of the picture. |
y.max |
The maximum value of the Y-axis. The default value is the maximum net benefit. |
pyh |
The height at which the bars are plotted cannot exceed y.min. |
relcol |
The colour of the relevant part of the bar. The default is red. |
irrelcol |
The colour of the irrelevant part of the bar. The default is blue. |
relabel |
Relevance Tags. |
irrellabel |
No relevant tags. |
text.size |
Font size. |
text.col |
The colour of the font. |
colbar |
The default is true, and if false is selected, bar plotting is cancelled. |
threshold.text |
The default is FALSE, if TRUE is selected, a text message for the threshold will be added. |
threshold.line |
The default is FALSE, and if TRUE is selected, lines for the threshold will be added. |
nudge_x |
Used to adjust the x-axis position of the point where the threshold is located. |
nudge_y |
Used to adjust the y-axis position of the point where the threshold is located. |
threshold.linetype |
The line shape of the threshold line. |
threshold.linewidth |
The line width of the threshold line. |
threshold.linecol |
The colour of the threshold line. |
po.text.size |
The size of the threshold point text. |
po.text.col |
The colour of the threshold point text. |
po.text.fill |
The background of the threshold point text. |
liftpec |
Threshold point left displacement. |
rightpec |
Threshold point right displacement. |
legend.position |
Set the position of the legend. |
Value
A picture.