ggmatplot {ggmatplot}

ggmatplot

Description

ggmatplot is a quick and easy way of plotting the columns of two matrices or data frames against each other using ggplot2.

Usage

ggmatplot(
  x = NULL,
  y = NULL,
  plot_type = c("point", "line", "both", "density", "histogram", "boxplot", "dotplot",
    "errorplot", "violin", "ecdf"),
  color = NULL,
  fill = NULL,
  shape = NULL,
  linetype = NULL,
  xlim = c(NA, NA),
  ylim = c(NA, NA),
  log = NULL,
  main = NULL,
  xlab = NULL,
  ylab = NULL,
  legend_label = NULL,
  legend_title = NULL,
  desc_stat = "mean_se",
  asp = NA,
  ...
)

Arguments

x, y

Vectors or matrices of data.

• The number of rows of x and y should be the same.

• Either x or y should be a vector, unless the number of columns of x and y are the same.

• Missing values (NAs) are allowed.

• If either x or y is missing, the other is used as y and a vector of 1:n is used as x.

plot_type

A string specifying the type of plot. Possible plot types are point, line, both(point + line), density, histogram, boxplot, dotplot, errorplot, violin, and ecdf. Default plot_type is point.

color, fill

Vectors of colors. Defining only one of them will update both color and fill aesthetics of the plot by default, unless they are both defined simultaneously.

• The number of colors should match the higher number of columns of matrices x or y, and will correspond to each of those columns.

• If only a single color is given, the same color will be used for all columns.

shape, linetype

A vector of shapes or line types respectively.

• The number of shapes/line types should match the higher number of columns of matrices x or y, and will correspond to each of those columns.

• If only a single shape/line type is given, the same shape/line type will be used for all columns.

xlim, ylim

Ranges of x and y axes.

• Each of them should be a two element vector specifying the lower and upper limits of the scale.

• If the larger value is given first, the scale will be reversed. If one of the limits is given as NA, the corresponding limit from the range of data will be used.

log

A string defining which axes to transform into a log scale. (x, y or xy)

main, xlab, ylab, legend_title

Strings to update plot title, x axis label, y axis label and legend title respectively.

legend_label

A vector of strings, to rename the legend labels.

desc_stat

Descriptive statistics to be used for visualizing errors, in errorplot. Possible values are mean_se, mean_sd, mean_range, median_iqr and median_range. Default desc_stat is mean_se.

asp

The y/x aspect ratio.

...

Other arguments passed on to the plot. Possible arguments are those that can be passed on to the underlying ggplot layers.

Value

A ggplot object. The columns of the input matrices will be plotted against each other using the defined plot type.

Plot Types

ggmatplotplots are built upon ⁠ggplot2 layers⁠. The following is a list of ggmatplot plot types, along with their underlying ⁠ggplot geoms⁠ or stats.

• point geom_point

• line geom_line

• both geom_point + geom_line

• density geom_density

• histogram geom_histogram

• boxplot geom_boxplot

• dotplot geom_dotplot

• errorplot geom_pointrange

• violin geom_violin

• ecdf stat_ecdf

Examples

# Define a data set
iris_sub <- subset(iris, Species == "setosa")
ggmatplot(iris_sub[, c(1, 3)], iris_sub[, c(2, 4)])
# Modify legend label and axis
ggmatplot(iris_sub[, c(1, 3)], iris_sub[, c(2, 4)],
  shape = c(4, 6),
  legend_label = c("Sepal", "Petal"), legend_title = "",
  xlab = "Length", ylab = "Width"
)