| ggaligner {ggaligner} | R Documentation |
Visualize the alignment object from msa package
Description
Generating a plot for msa object of DNA or Protein sequence
Usage
ggaligner(alignment,start=1,end=10,color="Clustal",font="helvetical",label_font = 12)
Arguments
alignment |
alignment object returned from msa package |
start |
start position of the desired alignment region |
end |
end position of the desired alignment region |
color |
color scheme to use ex: Clustal, Chemistry_AA, Shapely_AA |
font |
font family to use ex: helvetical, TimesNewRoman |
label_font |
font size of sequence names |
Value
An enhanced plot for the alignment using ggplot2 and ggmsa packages
Author(s)
Mohamed Soudy Mohmedsoudy2009@gmail.com
[Package ggaligner version 0.1 Index]