check_taxonomy {genesysr}R Documentation

Check MCPD taxonomic data (GENUS, SPECIES, SPAUTHOR, SUBTAXA, SUBTAUTHOR) using https://validator.genesys-pgr.org.

Description

Duplicate input rows are removed using dplyr::distinct() and results are returned for unique rows.

Usage

check_taxonomy(mcpd, toCurrentTaxa = FALSE)

Arguments

mcpd

Accession passport data in MCPD format

toCurrentTaxa

Should obsoleted names be reported?

Value

Results from validator

Examples

## Not run: 
  taxaCheck <- genesysr::check_taxonomy(mcpd)

## End(Not run)


[Package genesysr version 2.1.1 Index]