mutation.plot {genemodel}

mutation.plot

Description

This function plots mutations along genemodels created with genemodel.plot

Usage

mutation.plot(start, stop, text = "", drop = -0.15, col = "red",
  haplotypes = NULL)

Arguments

start

start position

stop

stop position

text

any text that you want displayed on the label

drop

how far below the gene model you want the mutation label to be placed

col

the color of the text and mutation line to be

haplotypes

the color of dots that you want to place along the mutation line to indicate some factor such as haplotype that the mutation belongs to

Examples

data(AT5G62640)
genemodel.plot(AT5G62640, 25149433, 25152541, "reverse")
mutation.plot(25149593, 25149593, text="P->S", col="red", haplotype="blue")