simGO {genekitr}

Simplify GO enrichment result

Description

The Gene Ontology (GO) is a major bioinformatics initiative to unify the representation of gene and gene product attributes across all species.

Usage

simGO(
  enrich_df,
  sim_method = c("Resnik", "Lin", "Rel", "Jiang", "Wang"),
  org = NULL,
  ont = NULL
)

Arguments

enrich_df

GO enrichment analysis of 'genORA()' result.

sim_method

Method of calculating the similarity between nodes, one of one of "Resnik", "Lin", "Rel", "Jiang" , "Wang" methods.

org

Organism name from 'biocOrg_name'.

ont

One of "bp", "mf", and "cc".

Value

A 'data.frame' contains simplified GO terms.