screeningResult {geneSLOPE}

screeningResult class

Description

A result of procedure for snp clumping produced by screen_snps

Details

Always a named list of eight elements

1. X numeric matrix, consists of snps that passed screening

2. y numeric vector, phenotype

3. X_info data.frame, SNP info from .map file

4. pVals numeric vector, p-values from marginal tests for each snp

5. numberOfSnps numeric, total number of SNPs in .raw file

6. selectedSnpsNumbers numeric vector, which rows of X_info data.frame are related to snps that passed screening

7. pValMax numeric, p-value used in screening procedure

8. phenotypeInfo data.frame, additional information about observations provied in phenotypeData object

See Also

phenotypeData screen_snps