dupli {gaston} | R Documentation |
Small data set to illustrate SNP.rm.duplicates
Description
The SNPs in this data frame are as follows:
- SNP 1.
Unduplicated SNP
- SNPs 2a and 2b.
Two duplicated SNPs with identical alleles
- SNPs 3a and 3b.
Two duplicated SNPs with swapped alleles
- SNPs 4a and 4b.
Two duplicated SNPs with flipped reference strand
- SNPs 5a and 5b.
Two duplicated SNPs with swapped alleles and flipped reference strand
- SNPs 6a and 6b.
Two duplicated SNPs with incompatible alleles
- SNPs 7a and 7b.
Two duplicated SNPs including one monomorphic SNP (one allele set to
"0"
)- SNPs 8a, 8b and 8c.
Three duplicated SNPs
- SNPs 9a, 9b and 9c.
Three duplicated SNPs with incompatible alleles
Usage
data(dupli)
Format
There are three data objects in the dataset:
dupli.gen
Genotype matrix
dupli.ped
Data frame containing all variables corresponding to a
.fam
filedupli.bim
Data frame containing all variables corresponding to a
.bim
file
See Also
Examples
data(dupli)
x <- as.bed.matrix(dupli.gen, fam = dupli.ped, bim = dupli.bim)
[Package gaston version 1.6 Index]