| scib_summary {funkyheatmap} | R Documentation |
Summary results from the scIB project
Description
This dataset was generated by running the data-raw/scib_summary.R script.
This script downloads data for the RNA tasks from the
scIB reproducibility repository
and summarises it similarly (but not exactly like) what was done in the
original paper to give a final ranking of the top performing methods.
It is used in the scIB vignette (vignette("scIB")) to reproduce
the overall summary figure in Luecken et al. 2021.
Usage
scib_summary
Format
An object of class tbl_df (inherits from tbl, data.frame) with 20 rows and 27 columns.
References
Luecken MD, Büttner M, Chaichoompu K, Danese A, Interlandi M, Mueller MF, Strobl DC, Zappia L, Dugas M, Colomé-Tatché M, Theis FJ (2021). “Benchmarking atlas-level data integration in single-cell genomics.” Nature methods. doi:10.1038/s41592-021-01336-8.