plot_pathways_stacked_barplot {func2vis}

Stacked Barplot of Cleaned Pathways

Description

Make a stacked barplot like the one available in Ingenuity Pathway Analysis highlighting percentage of up, down and non-differentially expressed genes in the set of clean enriched pathways obtained from 'ConsensusPathDB' by performing gene set overexpression analysis. You need to run the function clean_pathways to obtain the input data frame

Usage

plot_pathways_stacked_barplot(final_df_pathway)

Arguments

final_df_pathway

Clean and clustered pathways obtained using clean_pathways.

Value

Returns a stacked barplot of type ggplot.

Note

[e-mail]

Author(s)

Raghvendra Mall

See Also

clean_pathways, plot_go_terms

Examples

data("t.tests.treatment.sign")
data("enriched_pathways")
revised_pathway <- clean_pathways(df_case_vs_ctrl=t.tests.treatment.sign,
                                  df_pathway = enriched_pathways)
p <- plot_pathways_stacked_barplot(revised_pathway)
p