readss2Dir {ftrCOOL}

Read ss2 predicted Directory (readss2Dir)

Description

This function reads a directory that contains the output files of PSIPRED It gets the directory path as the input and returns a list of vectors. Each vector contains the secondary structure of the amino acids in a peptide/protein sequence.

Usage

readss2Dir(dirPath)

Arguments

dirPath

The path of the directory which contains all predss2 files. Each file belongs to a sequence.

Value

returns a list of vectors with all the predicted secondary structure for each amino acid. The length of the list is the number of files(sequences) and the length of each vector is (length sequence(i))

Examples

PredSS2dir<-system.file("testForder",package="ftrCOOL")
PredSS2dir<-paste0(PredSS2dir,"/ss2Dir/")
listPredVect<-readss2Dir(PredSS2dir)