readPSSMdir {ftrCOOL}

Read PSSM Directory (readPSSMdir)

Description

This function reads a directory that contains the output psi-blast. It gets the directory path as the input and returns a list of vectors. Each vector includes the type for the amino acids of the sequence.

Usage

readPSSMdir(dirPath)

Arguments

dirPath

the path of a directory which contains all the VSL2 output files.

Value

a list of vectors with all the predicted disorder/order type for each amino acid. The length of the list is equal to the number of files(sequences) and the length of each vector is the length of the sequence(i).

Examples

pssmDir<-system.file("testForder",package="ftrCOOL")
pssmDir<-paste0(pssmDir,"/PSSMdir/")
listPredVect<-readPSSMdir(pssmDir)