| CTDD {ftrCOOL} | R Documentation |
CTD Distribution (CTDD)
Description
This function computes the distribution part of CTD. It calculates fifteen values for each property. For more information, please check the references.
Usage
CTDD(seqs, label = c())
Arguments
seqs |
is a FASTA file with amino acid sequences. Each sequence starts with a '>' character. Also, seqs could be a string vector. Each element of the vector is a peptide/protein sequence. |
label |
is an optional parameter. It is a vector whose length is equivalent to the number of sequences. It shows the class of each entry (i.e., sequence). |
Value
This function returns a feature matrix. The number of rows is equal to the number of sequences and the number of columns is 15*7.
References
Dubchak, Inna, et al. "Prediction of protein folding class using global description of amino acid sequence." Proceedings of the National Academy of Sciences 92.19 (1995): 8700-8704.
Examples
filePrs<-system.file("extdata/proteins.fasta",package="ftrCOOL")
CTD_D<-CTDD(seqs=filePrs)